I haven't used neat specifically, and this is purely subjective, but I've been injecting purely random individuals into my genetic algorithm implementations ...
https://www.google.com/url?rct=j&sa=t&url=http://scifiaddicts.com/p/genetic_algorithms/comments/oxcso6/how_should_the_first_generation_in_the_neat/&ct=ga&cd=CAIyGmUxOTc3ODMwMTUxMGEzOTU6Y29tOmVuOlVT&usg=AFQjCNGowSPYEfmOJ57LTtUSLJNDfsjI0A
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